MolNFT v1 · #184178 · protein
Human cyclophilin D in complex with N-(5-ethyl-4-oxo-1,2,3,4,5,6- hexahydro-1,5-benzodiazocin-8-yl)-7METHYL-2-oxo-1H,2H-PYRAZOLO[1,5- A]PYRIMIDINE-6-carboxamide
7OGI: “Human cyclophilin D in complex with N-(5-ethyl-4-oxo-1,2,3,4,5,6…”. X-ray diffraction, 1 ligand (VDH). MolNFT v1 #184178 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7OGI
- Type
- protein
- Length
- 164 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P30405
- Ligands
- VDH
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 164 | — | P30405 |
Ligands and binding sites
- VDH · N-(5-ethyl-4-oxidanylidene-1,2,3,6-tetrahydro-1,5-benzodiazocin-8-yl)-7-methyl-2-oxidanylidene-1H-pyrazolo[1,5-a]pyrimidine-6-carboxamide · ligand · chains A
- DMS · Dimethyl sulfoxide · additive · chains A
- PG4 · Tetraethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7OGI · Human Cyclophilin D in complex with N-(5-ethyl-4-oxo-1,2,3,4,5,6-hexahydro-1,5-benzodiazoc… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P30405
- Elsewhere: RCSB PDB 7OGI · PDBe 7OGI · UniProt P30405
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