MolNFT v1 · #184110 · protein
Neisseria gonorrhoeae transaldolase at 2.7 mgy dose
7ODP: “Neisseria gonorrhoeae transaldolase at 2.7 mgy dose”. X-ray diffraction, 3 pockets (best druggability 0.49). MolNFT v1 #184110 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7ODP
- Type
- protein
- Length
- 352 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transaldolase
- EC
- 2.2.1.2
- UniProt
- A0A1D3FXY0
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 57% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transaldolase (EC 2.2.1.2) | protein | 352 | 57% helix, 12% strand | A0A1D3FXY0 |
Ligands and binding sites
- CIT · Citric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 165 | 0.49 | 0.77 | 28 | CIT |
| 2 | 103 | 0.37 | 0.75 | 18 | empty |
| 3 | 55 | 0.26 | 0.73 | 16 | empty |
Modifications
Observed in the structure: 1 covalent, 1 modified (additive adduct, oxidation).
Compared structures
- 7ODP · Neisseria gonorrhoeae transaldolase at 2.7 MGy dose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1D3FXY0
- Elsewhere: RCSB PDB 7ODP · PDBe 7ODP · UniProt A0A1D3FXY0
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