MolNFT v1 · #18408 · protein
Structure of mammalian cytochrome P450 2B4
1PO5: “Structure of mammalian cytochrome P450 2B4”. X-ray diffraction, 1 ligand (HEM), 6 pockets (best druggability 0.75). MolNFT v1 #18408 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1PO5
- Type
- protein
- Length
- 465 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome P450 2B4
- EC
- 1.14.14.1
- UniProt
- P00178
- Ligands
- HEM
- Pockets
- 6 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome P450 2B4 (EC 1.14.14.1) | protein | 465 | 52% helix, 9% strand | P00178 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 832 | 0.75 | 0.79 | 70 | HEM |
| 2 | 500 | 0.68 | 0.78 | 64 | empty |
| 3 | 195 | 0.51 | 0.76 | 31 | empty |
| 4 | 83 | 0.36 | 0.76 | 20 | empty |
| 5 | 75 | 0.33 | 0.74 | 13 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00178
- Elsewhere: RCSB PDB 1PO5 · PDBe 1PO5 · UniProt P00178
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