MolNFT v1 · #183963 · protein
Nmhr light state structure at 22.5 ms (20 - 25 ms) after photoexcitation determined by serial millisecond crystallography
7O8Q · Chloride pumping rhodopsin: “Nmhr light state structure at 22.5 ms (20 - 25 ms) after photoexcitation determined by serial millisecond…”. X-ray diffraction, 3 ligands (OLA, RET, CL), 2 pockets (best druggability 0.72). MolNFT v1…
- PDB
- 7O8Q
- Type
- protein
- Length
- 258 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chloride pumping rhodopsin
- UniProt
- W8VZW3
- Ligands
- OLA, RET, CL
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chloride pumping rhodopsin | protein | 258 | 79% helix, 3% strand | W8VZW3 |
Ligands and binding sites
- OLA · Oleic acid · ligand · 5 copies · chains A
- RET · Retinal · ligand · chains A
- CL · Chloride ion · ion · chains A
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 151 | 0.72 | 0.90 | 24 | RET |
| 2 | 50 | 0.32 | 0.78 | 16 | empty |
Modifications
Observed in the structure: 1 cofactor (retinal Schiff base).
Compared structures
- 7O8Q · NmHR light state structure at 22.5 ms (20 - 25 ms) after photoexcitation determined by… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W8VZW3
- Elsewhere: RCSB PDB 7O8Q · PDBe 7O8Q · UniProt W8VZW3
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