MolNFT v1 · #18391 · protein

Crystal structure of peptide-N(4)-(N-acetyl-beta-D-glucosaminyl) asparagine amidase at 2.2 ångströms resolution

1PNG · Peptide-N(4)-(N-acetyl-beta-D-GLUCOSAMINYL)ASPARAGINE…: “Crystal structure of peptide-N(4)-(N-acetyl-beta-D-glucosaminyl) asparagine amidase at 2.2 ångströms…”. X-ray diffraction, 4 pockets (best druggability 0.47). MolNFT v1 #18391…

PDB: 1PNG
Type: protein
Length: 310 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptide-N(4)-(N-acetyl-beta-D-GLUCOSAMINYL)ASPARAGINE amidase F
EC: 3.5.1.52
UniProt: P21163
Pockets: 4 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptide-N(4)-(N-acetyl-beta-D-GLUCOSAMINYL)ASPARAGINE amidase F (EC 3.5.1.52)	protein	310	5% helix, 50% strand	P21163

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	107	0.47	0.80	22	empty
2	50	0.34	0.79	11	empty
3	76	0.31	0.74	20	empty
4	57	0.29	0.74	17	empty

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

1PNG · Crystal structure of peptide-N(4)-(N-acetyl-beta-D-glucosaminyl) asparagine amidase at… · the same entry in another collection · chain A against A, TM-score 1.00
P21163 · AlphaFold monomer V2.0 prediction for peptide-N(4)-(N-acetyl-beta-D… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P21163
Elsewhere: RCSB PDB 1PNG · PDBe 1PNG · UniProt P21163

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