MolNFT v1 · #303827 · protein
AlphaFold monomer V2.0 prediction for peptide-N(4)-(N-acetyl-beta-D- GLUCOSAMINYL)ASPARAGINE amidase F (P21163)
P21163 · Peptide-N(4)-(N-acetyl-beta-D-GLUCOSAMINYL)ASPARAGINE…: “AlphaFold monomer V2.0 prediction for peptide-N(4)-(N-acetyl-beta-D- GLUCOSAMINYL)ASPARAGINE amidase F…”. 3 pockets (best druggability 0.71). MolNFT v1 #303827 on GenesisL1…
- Accession
- P21163
- Type
- protein
- Length
- 354 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xffcCCa7Da70F32A6f766185797d8A09ea11e0830
- Molecule
- Peptide-N(4)-(N-acetyl-beta-D-GLUCOSAMINYL)ASPARAGINE amidase F
- UniProt
- P21163
- Pockets
- 3 · best druggability 0.71
Structure
1 distinct chain · 3% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide-N(4)-(N-acetyl-beta-D-GLUCOSAMINYL)ASPARAGINE amidase F | protein | 354 | 3% helix, 42% strand | P21163 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 769 | 0.71 | 0.77 | 65 | empty |
| 2 | 115 | 0.47 | 0.79 | 18 | empty |
| 3 | 66 | 0.29 | 0.74 | 16 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 1PGS · The three-dimensional structure of pngase F, a glycosylasparaginase from flavobacterium… · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 1PGS · The three-dimensional structure of pngase F, a glycosylasparaginase from flavobacterium… · an experimental structure of the same protein · chain A against A, TM-score 0.88
- 1PNF · Pngase F complex with di-N-acetylchitobiose · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 1PNF · Pngase F complex with di-N-acetylchitobiose · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 1PNG · Crystal structure of peptide-N(4)-(N-acetyl-beta-D-glucosaminyl) asparagine amidase at… · an experimental structure of the same protein · chain A against A, TM-score 0.87
- 1PNG · Crystal structure of peptide-N(4)-(N-acetyl-beta-D-glucosaminyl) asparagine amidase at… · an experimental structure of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21163
- Elsewhere: UniProt P21163 · AlphaFold DB P21163
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