GL1X · GenesisL1 explorer

MolNFT v1 · #183757 · protein

Complex-B bound [fefe]-hydrogenase maturase hyde fromt. maritima (5'DA + methionine)

7O26: “Complex-B bound [fefe]-hydrogenase maturase hyde fromt. maritima (5'DA + methionine)”. X-ray diffraction, 10 ligands (CPS, 5AD, FES). MolNFT v1 #183757 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7O26
Type
protein
Length
349 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q9X0Z6
Ligands
CPS, 5AD, FES, SF4, FE2, CMO, H2S, CYN, IOD, CL

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein349—Q9X0Z6

Ligands and binding sites

  • CPS · 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate · ligand · 5 copies · chains A
  • 5AD · 5'-deoxyadenosine · ligand · chains A
  • FES · Fe2/s2 (inorganic) cluster · ligand · chains A
  • SF4 · Iron/sulfur cluster · ligand · chains A
  • FE2 · Fe (II) ion · metal · chains A
  • CMO · Carbon monoxide · ion · 2 copies · chains A
  • H2S · Hydrosulfuric acid · ion · 2 copies · chains A
  • CYN · Cyanide ion · ion · chains A
  • IOD · Iodide ion · ion · chains A
  • CL · Chloride ion · ion · chains A
  • GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7O26 · Complex-B bound [FeFe]-hydrogenase maturase HydE fromT. Maritima (5'dA + Methionine) · the same entry in another collection · chain A against A, TM-score 0.99
  • Q9X0Z6 · AlphaFold monomer V2.0 prediction for [fefe] hydrogenase maturase subunit hyde (Q9X0Z6) · a predicted model of the same protein · chain A against A, TM-score 0.99

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