MolNFT v1 · #183620 · protein
Crystal structure of the K417N mutant receptor binding domain of SARS- cov-2 spike glycoprotein in complex with covox-222 and EY6A fabs
7NX7: “Crystal structure of the K417N mutant receptor binding domain of SARS- cov-2 spike glycoprotein in complex…”. X-ray diffraction, 3 ligands (NAG, SO4, CL). MolNFT v1 #183620 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7NX7
- Type
- protein
- Length
- 1,048 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, SO4, CL
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 214 | — | — |
| L | — | protein | 214 | — | — |
| E | — | protein | 193 | — | P0DTC2 |
| A | — | protein | 214 | — | — |
| B | — | protein | 213 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains E
- SO4 · Sulfate ion · ion · 13 copies · chains E, A, B
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · 3 copies · chains E, A, B
- CIT · Citric acid · additive · chains E, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7NX7 · Crystal structure of the K417N mutant receptor binding domain of SARS-CoV-2 Spike… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7NX7 · PDBe 7NX7 · UniProt P0DTC2
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