MolNFT v1 · #183256 · protein
Mycobacterium smegmatis ATP synthase state 3A
7NJQ: “Mycobacterium smegmatis ATP synthase state 3A”. Electron microscopy, 3 ligands (ATP, ADP, MG). MolNFT v1 #183256 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7NJQ
- Type
- protein
- Length
- 4,936 residues
- Chains
- 20
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0R202, A0R200, A0R201, A0R1Z9, A0R205, A0R206, A0R204, A0R203
- Ligands
- ATP, ADP, MG
Structure
electron microscopy · 13 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 517 | — | A0R202 |
| B | — | protein | 504 | — | A0R202 |
| C | — | protein | 521 | — | A0R202 |
| D | — | protein | 467 | — | A0R200 |
| E | — | protein | 464 | — | A0R200 |
| F | — | protein | 468 | — | A0R200 |
| G | — | protein | 297 | — | A0R201 |
| H | — | protein | 118 | — | A0R1Z9 |
| L, N, O, P, Q | — | protein | 84 | — | A0R205 |
| M, R, S, T | — | protein | 85 | — | A0R205 |
| a | — | protein | 238 | — | A0R206 |
| b | — | protein | 144 | — | A0R204 |
| d | — | protein | 438 | — | A0R203 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 4 copies · chains A, D, B, E, C, F
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains C, D, E
- MG · Magnesium ion · metal · 5 copies · chains A, B, C, D, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- A0R1Z9 · AlphaFold monomer V2.0 prediction for ATP synthase epsilon chain (A0R1Z9) · a predicted model of the same protein · chain H against A, TM-score 0.98
- A0R202 · AlphaFold monomer V2.0 prediction for ATP synthase subunit alpha (A0R202) · a predicted model of the same protein · chain A against A, TM-score 0.98
- A0R200 · AlphaFold monomer V2.0 prediction for ATP synthase subunit beta (A0R200) · a predicted model of the same protein · chain E against A, TM-score 0.97
- A0R201 · AlphaFold monomer V2.0 prediction for ATP synthase gamma chain (A0R201) · a predicted model of the same protein · chain G against A, TM-score 0.95
- A0R203 · AlphaFold monomer V2.0 prediction for ATP synthase subunit B-delta (A0R203) · a predicted model of the same protein · chain d against A, TM-score 0.72
- A0R204 · AlphaFold monomer V2.0 prediction for ATP synthase subunit B (A0R204) · a predicted model of the same protein · chain b against A, TM-score 0.56
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0R202
- Every structure of UniProt A0R200
- Every structure of UniProt A0R201
- Every structure of UniProt A0R1Z9
- Every structure of UniProt A0R205
- Every structure of UniProt A0R206
- Every structure of UniProt A0R204
- Every structure of UniProt A0R203
- Elsewhere: RCSB PDB 7NJQ · PDBe 7NJQ · UniProt A0R202 · UniProt A0R200 · UniProt A0R201 · UniProt A0R1Z9 · UniProt A0R205 · UniProt A0R206 · UniProt A0R204 · UniProt A0R203
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