MolNFT v1 · #183253 · protein
Mycobacterium smegmatis ATP synthase state 1D
7NJN: “Mycobacterium smegmatis ATP synthase state 1D”. Electron microscopy, 3 ligands (ATP, ADP, MG). MolNFT v1 #183253 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7NJN
- Type
- protein
- Length
- 4,927 residues
- Chains
- 20
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0R202, A0R200, A0R201, A0R1Z9, A0R205, A0R206, A0R204, A0R203
- Ligands
- ATP, ADP, MG
Structure
electron microscopy · 16 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 503 | — | A0R202 |
| B | — | protein | 505 | — | A0R202 |
| C | — | protein | 536 | — | A0R202 |
| D | — | protein | 468 | — | A0R200 |
| E | — | protein | 464 | — | A0R200 |
| F | — | protein | 469 | — | A0R200 |
| G | — | protein | 293 | — | A0R201 |
| H | — | protein | 118 | — | A0R1Z9 |
| L, T | — | protein | 83 | — | A0R205 |
| M, O, P | — | protein | 85 | — | A0R205 |
| N, S | — | protein | 84 | — | A0R205 |
| Q | — | protein | 82 | — | A0R205 |
| R | — | protein | 84 | — | A0R205 |
| a | — | protein | 238 | — | A0R206 |
| b | — | protein | 145 | — | A0R204 |
| d | — | protein | 433 | — | A0R203 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 4 copies · chains A, D, B, E, C, F
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains C, D, E
- MG · Magnesium ion · metal · 5 copies · chains A, B, C, D, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7NJN · Mycobacterium smegmatis ATP synthase state 1d · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0R202
- Every structure of UniProt A0R200
- Every structure of UniProt A0R201
- Every structure of UniProt A0R1Z9
- Every structure of UniProt A0R205
- Every structure of UniProt A0R206
- Every structure of UniProt A0R204
- Every structure of UniProt A0R203
- Elsewhere: RCSB PDB 7NJN · PDBe 7NJN · UniProt A0R202 · UniProt A0R200 · UniProt A0R201 · UniProt A0R1Z9 · UniProt A0R205 · UniProt A0R206 · UniProt A0R204 · UniProt A0R203
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