MolNFT v1 · #183103 · protein
Structure of T. atroviride fdc wild-type (tafdc) in complex with prfmn
7NEY · Ferulic acid decarboxylase 1: “Structure of T. atroviride fdc wild-type (tafdc) in complex with prfmn”. X-ray diffraction, 3 ligands (4LU, K, MN), 7 pockets (best druggability 0.85). MolNFT v1 #183103 on GenesisL1: 3D structure…
- PDB
- 7NEY
- Type
- protein
- Length
- 993 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferulic acid decarboxylase 1
- EC
- 4.1.1.102
- UniProt
- G9NLP8
- Ligands
- 4LU, K, MN
- Pockets
- 7 · best druggability 0.85
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferulic acid decarboxylase 1 (EC 4.1.1.102) | protein | 497 | 31% helix, 24% strand | G9NLP8 |
| B | Ferulic acid decarboxylase 1 (EC 4.1.1.102) | protein | 496 | 32% helix, 24% strand | G9NLP8 |
Ligands and binding sites
- 4LU · 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-yl)-D-ribitol · ligand · 2 copies · chains A, B
- K · Potassium ion · metal · 4 copies · chains A, B
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 323 | 0.85 | 0.95 | 40 | 4LU, K |
| 2 | 306 | 0.85 | 0.95 | 39 | 4LU, K |
| 3 | 210 | 0.63 | 0.83 | 35 | empty |
| 4 | 154 | 0.61 | 0.84 | 27 | empty |
| 5 | 324 | 0.54 | 0.74 | 48 | empty |
Interfaces
1 interface between chains.
- A–B · 4156 Ų buried · 66 hydrogen bonds · protein-protein
Compared structures
- 7NEY · Structure of T. atroviride Fdc wild-type (TaFdc) in complex with prFMN · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G9NLP8
- Elsewhere: RCSB PDB 7NEY · PDBe 7NEY · UniProt G9NLP8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.