MolNFT v1 · #183067 · protein
Thyx-FADH2 soaked with 20 mm formaldehyde
7NDW: “Thyx-FADH2 soaked with 20 mm formaldehyde”. X-ray diffraction, 3 ligands (HUF, FDA, PO4). MolNFT v1 #183067 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7NDW
- Type
- protein
- Length
- 856 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9WYT0
- Ligands
- HUF, FDA, PO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 211 | — | Q9WYT0 |
| B | — | protein | 211 | — | Q9WYT0 |
| C | — | protein | 216 | — | Q9WYT0 |
| D | — | protein | 218 | — | Q9WYT0 |
Ligands and binding sites
- HUF · [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-methanoyl-7,8-dimethyl-2,4-bis(oxidanylidene)-1H-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate · ligand · 2 copies · chains A, C, D, B
- FDA · Dihydroflavine-adenine dinucleotide · ligand · 2 copies · chains A, B, C, D
- PO4 · Phosphate ion · ion · 3 copies · chains B, C, A, D
- PEG · Di(hydroxyethyl)ether · additive · 7 copies · chains A, B, D
- PG4 · Tetraethylene glycol · additive · chains A, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7NDW · ThyX-FADH2 soaked with 20 mM Formaldehyde · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WYT0
- Elsewhere: RCSB PDB 7NDW · PDBe 7NDW · UniProt Q9WYT0
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