MolNFT v1 · #18269 · DNA + RNA
RNA/DNA hybrid decamer of CAAAGAAAAG/CTTTTCTTTG
1PJG · 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3': “RNA/DNA hybrid decamer of CAAAGAAAAG/CTTTTCTTTG”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #18269 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1PJG
- Type
- DNA + RNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'; 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'
- Ligands
- CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' | rna | 10 | — | — |
| B | 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3' | dna | 10 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 464 Ų buried · 37 hydrogen bonds · nucleic-nucleic
Compared structures
- 1PJG · RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1PJG · PDBe 1PJG
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