MolNFT v1 · #182482 · protein

Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with (2-fluoro-4-((4-phenylpiperidin-1-YL)SULFONYL)BENZOYL)GLYCINE

7MS6 · Ubiquitin carboxyl-terminal hydrolase 5: “Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with…”. X-ray diffraction, 3 ligands (ZPV, ZN, SO4). MolNFT v1 #182482 on GenesisL1: 3D structure, binding sites and…

PDB: 7MS6
Type: protein
Length: 111 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ubiquitin carboxyl-terminal hydrolase 5
EC: 3.4.19.12
UniProt: P45974
Ligands: ZPV, ZN, SO4

Structure

x-ray diffraction · 1 distinct chain · 14% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.4.19.12)	protein	111	14% helix, 22% strand	P45974

Ligands and binding sites

ZPV · N-[2-fluoro-4-(4-phenylpiperidine-1-sulfonyl) benzoyl]glycine · ligand · chains A
ZN · Zinc ion · metal · chains A
SO4 · Sulfate ion · ion · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7MS6 · Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with… · the same entry in another collection · chain A against A, TM-score 1.00
P45974 · AlphaFold monomer V2.0 prediction for ubiquitin carboxyl-terminal hydrolase 5 (P45974) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P45974
Elsewhere: RCSB PDB 7MS6 · PDBe 7MS6 · UniProt P45974

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