MolNFT v1 · #182299 · protein
Crystal structure of the class ie ribonucleotide reductase beta-nrdi complex from aerococcus urinae in oxidized form with CU(I) bound
7MMR: “Crystal structure of the class ie ribonucleotide reductase beta-nrdi complex from aerococcus urinae in…”. X-ray diffraction, 3 ligands (FMN, CU1, CA). MolNFT v1 #182299 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MMR
- Type
- protein
- Length
- 1,782 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- F2I8X9, A0A178HGH7
- Ligands
- FMN, CU1, CA
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D | — | protein | 309 | — | F2I8X9 |
| B | — | protein | 311 | — | F2I8X9 |
| E, H | — | protein | 136 | — | A0A178HGH7 |
| G | — | protein | 134 | — | A0A178HGH7 |
| F | — | protein | 138 | — | A0A178HGH7 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 4 copies · chains A, E, C, G, B, F, D, H
- CU1 · Copper (I) ion · metal · 9 copies · chains A, B, C, D
- CA · Calcium ion · metal · 7 copies · chains C, D, A, E, G, B, F, H
- GOL · Glycerol · additive · 6 copies · chains A, E, B, C, D
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MMR · Crystal Structure of the Class Ie Ribonucleotide Reductase Beta-NrdI complex from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F2I8X9
- Every structure of UniProt A0A178HGH7
- Elsewhere: RCSB PDB 7MMR · PDBe 7MMR · UniProt F2I8X9 · UniProt A0A178HGH7
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