MolNFT v1 · #182197 · protein
VIP4DA2 toxin structure
7MJR · VIP4DA1 protein: “VIP4DA2 toxin structure”. X-ray diffraction, 2 ligands (CA, SO4), 7 pockets (best druggability 0.72). MolNFT v1 #182197 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MJR
- Type
- protein
- Length
- 899 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VIP4DA1 protein
- UniProt
- A0A2U5FTM5
- Ligands
- CA, SO4
- Pockets
- 7 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VIP4DA1 protein | protein | 899 | 12% helix, 35% strand | A0A2U5FTM5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 766 | 0.72 | 0.78 | 97 | empty |
| 2 | 163 | 0.54 | 0.80 | 21 | empty |
| 3 | 140 | 0.48 | 0.78 | 24 | empty |
| 4 | 104 | 0.47 | 0.80 | 28 | empty |
| 5 | 124 | 0.44 | 0.77 | 23 | empty |
Compared structures
- 7MJR · Vip4Da2 toxin structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2U5FTM5
- Elsewhere: RCSB PDB 7MJR · PDBe 7MJR · UniProt A0A2U5FTM5
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