MolNFT v1 · #182053 · protein
Autoinhibited BRAF:(14-3-3)2 complex with the braf rbd resolved
7MFE · SERINE/THREONINE-protein kinase B-RAF: “Autoinhibited BRAF:(14-3-3)2 complex with the braf rbd resolved”. Electron microscopy, 1 ligand (ZN), 15 pockets (best druggability 0.86). MolNFT v1 #182053 on GenesisL1: 3D structure, binding…
- PDB
- 7MFE
- Type
- protein
- Length
- 859 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SERINE/THREONINE-protein kinase B-RAF; 14-3-3 protein ZETA/DELTA
- EC
- 2.7.11.1
- UniProt
- P15056, P63104
- Ligands
- ZN
- Pockets
- 15 · best druggability 0.86
Structure
electron microscopy · 3 distinct chains · 54% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SERINE/THREONINE-protein kinase B-RAF (EC 2.7.11.1) | protein | 409 | 26% helix, 13% strand | P15056 |
| C | 14-3-3 protein ZETA/DELTA | protein | 226 | 78% helix, 0% strand | P63104 |
| B | 14-3-3 protein ZETA/DELTA | protein | 224 | 81% helix, 0% strand | P63104 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
15 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1160 | 0.86 | 0.87 | 109 | empty |
| 2 | 603 | 0.82 | 0.87 | 80 | empty |
| 3 | 160 | 0.72 | 0.90 | 31 | empty |
| 4 | 127 | 0.69 | 0.90 | 28 | empty |
| 5 | 264 | 0.67 | 0.84 | 35 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1748 Ų buried · 24 hydrogen bonds · protein-protein
- A–C · 1519 Ų buried · 10 hydrogen bonds · protein-protein
- C–B · 990 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (phosphorylation).
Compared structures
- 7MFE · Autoinhibited BRAF:(14-3-3)2 complex with the BRAF RBD resolved · the same entry in another collection · chain A against A, TM-score 1.00
- P63104 · AlphaFold monomer V2.0 prediction for 14-3-3 protein ZETA/DELTA (P63104) · a predicted model of the same protein · chain B against A, TM-score 0.97
- P15056 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase B-RAF (P15056) · a predicted model of the same protein · chain A against A, TM-score 0.63
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15056
- Every structure of UniProt P63104
- Elsewhere: RCSB PDB 7MFE · PDBe 7MFE · UniProt P15056 · UniProt P63104
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