MolNFT v1 · #182040 · protein
Structure of yeast UBR1 in complex with UBC2 and N-degron
7MEX: “Structure of yeast UBR1 in complex with UBC2 and N-degron”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #182040 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MEX
- Type
- protein
- Length
- 1,967 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0CG48, P06104, P19812
- Ligands
- ZN
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | — | protein | 76 | — | P0CG48 |
| B | — | protein | 150 | — | P06104 |
| D | — | protein | 4 | — | — |
| A | — | protein | 1737 | — | P19812 |
Ligands and binding sites
- ZN · Zinc ion · metal · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MEX · Structure of yeast Ubr1 in complex with Ubc2 and N-degron · the same entry in another collection · chain C against C, TM-score 1.00
- P06104 · AlphaFold monomer V2.0 prediction for ubiquitin-conjugating enzyme E2 2 (P06104) · a predicted model of the same protein · chain B against A, TM-score 0.98
- P19812 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase UBR1 (P19812) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0CG48
- Every structure of UniProt P06104
- Every structure of UniProt P19812
- Elsewhere: RCSB PDB 7MEX · PDBe 7MEX · UniProt P0CG48 · UniProt P06104 · UniProt P19812
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