MolNFT v1 · #181997 · protein
Structure of the neisseria gonorrhoeae ribonucleotide reductase in the inactive state
7MDI: “Structure of the neisseria gonorrhoeae ribonucleotide reductase in the inactive state”. Electron microscopy, 4 ligands (DTP, CDP, FEO). MolNFT v1 #181997 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MDI
- Type
- protein
- Length
- 4,348 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5F8Z6, Q5F8Z5
- Ligands
- DTP, CDP, FEO, MG
Structure
electron microscopy · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D, C | — | protein | 734 | — | Q5F8Z6 |
| E, G, F, H | — | protein | 353 | — | Q5F8Z5 |
Ligands and binding sites
- DTP · 2'-deoxyadenosine 5'-triphosphate · ligand · 8 copies · chains A, B, D, C
- CDP · Cytidine-5'-diphosphate · ligand · 4 copies · chains A, B, D, C
- FEO · Mu-oxo-diiron · ligand · 4 copies · chains E, G, F, H
- MG · Magnesium ion · metal · 8 copies · chains A, B, D, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MDI · Structure of the Neisseria gonorrhoeae ribonucleotide reductase in the inactive state · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5F8Z6
- Every structure of UniProt Q5F8Z5
- Elsewhere: RCSB PDB 7MDI · PDBe 7MDI · UniProt Q5F8Z6 · UniProt Q5F8Z5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.