MolNFT v1 · #181965 · protein
X-ray structure of pedv papain-like protease 2 bound to ub-pa
7MC9: “X-ray structure of pedv papain-like protease 2 bound to ub-pa”. X-ray diffraction, 2 ligands (AYE, ZN). MolNFT v1 #181965 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7MC9
- Type
- protein
- Length
- 2,465 residues
- Chains
- 16
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0S3MQV7, P0CG47
- Ligands
- AYE, ZN
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 233 | — | A0A0S3MQV7 |
| B, D, F, H, J, L, N, P | — | protein | 75 | — | P0CG47 |
| E | — | protein | 230 | — | A0A0S3MQV7 |
| G | — | protein | 232 | — | A0A0S3MQV7 |
| I, K, O | — | protein | 235 | — | A0A0S3MQV7 |
| M | — | protein | 232 | — | A0A0S3MQV7 |
Ligands and binding sites
- AYE · prop-2-en-1-amine · ligand · 8 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
- ZN · Zinc ion · metal · 14 copies · chains A, O, C, E, K, G, I, M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MC9 · X-RAY STRUCTURE OF PEDV PAPAIN-LIKE PROTEASE 2 bound to UB-PA · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0S3MQV7
- Every structure of UniProt P0CG47
- Elsewhere: RCSB PDB 7MC9 · PDBe 7MC9 · UniProt A0A0S3MQV7 · UniProt P0CG47
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