MolNFT v1 · #181917 · protein

HIV-1 protease (I84V) in complex with grl-98065

7MA1: “HIV-1 protease (I84V) in complex with grl-98065”. X-ray diffraction, 2 ligands (065, SO4), 1 pocket (best druggability 0.72). MolNFT v1 #181917 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7MA1
Type: protein
Length: 198 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protease
EC: 3.4.23.16
UniProt: P03367
Ligands: 065, SO4
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A	Protease (EC 3.4.23.16)	protein	99	4% helix, 55% strand	P03367

Ligands and binding sites

065 · (3r,3as,6ar)-hexahydrofuro[2,3-b]furan-3-yl(2s,3r)-3-hydroxy-4-(N-isobutylbenzo[d][1,3]dioxole-5-sulfonamido)-1-phenylbutan-2-ylcarbamate · ligand · chains B, A
SO4 · Sulfate ion · ion · 10 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	384	0.72	0.83	34	065

Interfaces

1 interface between chains.

B–A · 1811 Å² buried · 36 hydrogen bonds · protein-protein

Compared structures

7MA1 · HIV-1 Protease (I84V) in Complex with GRL-98065 · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03367
Elsewhere: RCSB PDB 7MA1 · PDBe 7MA1 · UniProt P03367

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