MolNFT v1 · #181876 · protein

Crystal structure of HLA-A*11:01 in complex with nsasfstfk, an 9-mer epitope from SARS-cov-2 spike (S370-378)

7M8T: “Crystal structure of HLA-A*11:01 in complex with nsasfstfk, an 9-mer epitope from SARS-cov-2 spike (S370-378)”. X-ray diffraction, 4 ligands (NA, CA, SO4). MolNFT v1 #181876 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 7M8T
Type: protein
Length: 385 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: U5YJK1, P61769, P0DTC2
Ligands: NA, CA, SO4, CL

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	276	—	U5YJK1
B	—	protein	100	—	P61769
C	—	protein	9	—	P0DTC2

Ligands and binding sites

NA · Sodium ion · metal · 2 copies · chains A, B
CA · Calcium ion · metal
SO4 · Sulfate ion · ion · 2 copies · chains A, B
CL · Chloride ion · ion · 2 copies · chains A, B
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7M8T · Crystal Structure of HLA-A*11:01 in complex with NSASFSTFK, an 9-mer epitope from… · the same entry in another collection · chain A against A, TM-score 1.00
P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt U5YJK1
Every structure of UniProt P61769
Every structure of UniProt P0DTC2
Elsewhere: RCSB PDB 7M8T · PDBe 7M8T · UniProt U5YJK1 · UniProt P61769 · UniProt P0DTC2

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