MolNFT v1 · #181745 · protein + DNA
DNA polymerase lambda, DCTP:AT MG2+ product state ternary complex, 960 min
7M4G: “DNA polymerase lambda, DCTP:AT MG2+ product state ternary complex, 960 min”. X-ray diffraction, 3 ligands (NA, MG, PO4). MolNFT v1 #181745 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7M4G
- Type
- protein + DNA
- Length
- 332 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UGP5
- Ligands
- NA, MG, PO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 310 | — | Q9UGP5 |
| T | — | dna | 11 | — | — |
| P | — | dna | 7 | — | — |
| D | — | dna | 4 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · 3 copies · chains A, P, D
- MG · Magnesium ion · metal · chains A, P
- PO4 · Phosphate ion · ion · chains A, P
- EDO · 1,2-ethanediol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7M4G · DNA Polymerase Lambda, dCTP:At Mg2+ Product State Ternary Complex, 960 min · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UGP5 · AlphaFold monomer V2.0 prediction for DNA polymerase lambda (Q9UGP5) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UGP5
- Elsewhere: RCSB PDB 7M4G · PDBe 7M4G · UniProt Q9UGP5
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