MolNFT v1 · #181744 · protein + DNA
DNA polymerase lambda, DCTP:AT MG2+ product state ternary complex, 300 min
7M4F: “DNA polymerase lambda, DCTP:AT MG2+ product state ternary complex, 300 min”. X-ray diffraction, 4 ligands (PPV, NA, MG). MolNFT v1 #181744 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7M4F
- Type
- protein + DNA
- Length
- 331 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UGP5
- Ligands
- PPV, NA, MG, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 309 | — | Q9UGP5 |
| T | — | dna | 11 | — | — |
| P | — | dna | 7 | — | — |
| D | — | dna | 4 | — | — |
Ligands and binding sites
- PPV · Pyrophosphate · ligand · chains A, P
- NA · Sodium ion · metal · 3 copies · chains A, P
- MG · Magnesium ion · metal · chains A, P
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q9UGP5 · AlphaFold monomer V2.0 prediction for DNA polymerase lambda (Q9UGP5) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UGP5
- Elsewhere: RCSB PDB 7M4F · PDBe 7M4F · UniProt Q9UGP5
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