MolNFT v1 · #181708 · protein
Dihydropyrimidine dehydrogenase (dpd) C671S mutant soaked with thymine and NADPH anaerobically
7M31: “Dihydropyrimidine dehydrogenase (dpd) C671S mutant soaked with thymine and NADPH anaerobically”. X-ray diffraction, 5 ligands (SF4, FAD, NAP). MolNFT v1 #181708 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7M31
- Type
- protein
- Length
- 4,047 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q28943
- Ligands
- SF4, FAD, NAP, FMN, TDR
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1011 | — | Q28943 |
| B | — | protein | 1011 | — | Q28943 |
| C | — | protein | 1008 | — | Q28943 |
| D | — | protein | 1017 | — | Q28943 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 16 copies · chains A, B, C, D
- FAD · Flavin-adenine dinucleotide · ligand · 4 copies · chains A, B, C, D
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · 4 copies · chains A, B, C, D
- FMN · Flavin mononucleotide · ligand · 4 copies · chains A, B, C, D
- TDR · Thymine · ligand · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q28943 · AlphaFold monomer V2.0 prediction for dihydropyrimidine dehydrogenase [NADP(+)] (Q28943) · a predicted model of the same protein · chain C against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q28943
- Elsewhere: RCSB PDB 7M31 · PDBe 7M31 · UniProt Q28943
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