MolNFT v1 · #181705 · protein
Closed conformation of the yeast wild-type gamma-turc
7M2Y: “Closed conformation of the yeast wild-type gamma-turc”. Electron microscopy, 1 ligand (GDP). MolNFT v1 #181705 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7M2Y
- Type
- protein
- Length
- 2,278 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P53378, P53540, P38863, P32380
- Ligands
- GDP
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 441 | — | P53378 |
| B | — | protein | 447 | — | P53378 |
| C | — | protein | 656 | — | P53540 |
| D | — | protein | 703 | — | P38863 |
| U | — | protein | 31 | — | P32380 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7M2Y · Closed conformation of the Yeast wild-type gamma-TuRC · the same entry in another collection · chain U against U, TM-score 1.00
- P53378 · AlphaFold monomer V2.0 prediction for tubulin gamma chain (P53378) · a predicted model of the same protein · chain A against A, TM-score 0.94
- P38863 · AlphaFold monomer V2.0 prediction for spindle pole body component SPC97 (P38863) · a predicted model of the same protein · chain D against A, TM-score 0.94
- P53540 · AlphaFold monomer V2.0 prediction for spindle pole body component SPC98 (P53540) · a predicted model of the same protein · chain C against A, TM-score 0.91
- P32380 · AlphaFold monomer V2.0 prediction for spindle pole body component 110 (P32380) · a predicted model of the same protein · chain U against A, TM-score 0.66
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53378
- Every structure of UniProt P53540
- Every structure of UniProt P38863
- Every structure of UniProt P32380
- Elsewhere: RCSB PDB 7M2Y · PDBe 7M2Y · UniProt P53378 · UniProt P53540 · UniProt P38863 · UniProt P32380
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