MolNFT v1 · #181527 · protein + DNA
Bacillus cereus DNA glycosylase alkd bound to a duocarmycin sa-adenine nucleobase adduct and DNA containing an abasic site
7LXJ: “Bacillus cereus DNA glycosylase alkd bound to a duocarmycin sa-adenine nucleobase adduct and DNA containing…”. X-ray diffraction, 3 ligands (ORP, YNY, CA). MolNFT v1 #181527 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7LXJ
- Type
- protein + DNA
- Length
- 244 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C2T7T7
- Ligands
- ORP, YNY, CA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 227 | — | C2T7T7 |
| B | — | dna | 8 | — | — |
| C | — | dna | 9 | — | — |
Ligands and binding sites
- ORP · 2-deoxy-5-phosphono-ribose · ligand · chains A, B
- YNY · Methyl (8R)-8-{[(4P)-6-amino-3H-purin-3-yl]methyl}-4-hydroxy-6-(5,6,7-trimethoxy-1H-indole-2-carbonyl)-3,6, 7,8-tetrahydropyrrolo[3,2-e]indole-2-carboxylate · ligand · chains A, B, C
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LXJ · Bacillus cereus DNA glycosylase AlkD bound to a duocarmycin SA-adenine nucleobase adduct… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C2T7T7
- Elsewhere: RCSB PDB 7LXJ · PDBe 7LXJ · UniProt C2T7T7
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