MolNFT v1 · #181446 · protein
The structure of mall mutant enzyme S536R from bacillus subtilis
7LV6 · Oligo-1,6-glucosidase 1: “The structure of mall mutant enzyme S536R from bacillus subtilis”. X-ray diffraction, 1 ligand (CA), 3 pockets (best druggability 0.80). MolNFT v1 #181446 on GenesisL1: 3D structure, binding sites and…
- PDB
- 7LV6
- Type
- protein
- Length
- 559 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oligo-1,6-glucosidase 1
- EC
- 3.2.1.10
- UniProt
- O06994
- Ligands
- CA
- Pockets
- 3 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Oligo-1,6-glucosidase 1 (EC 3.2.1.10) | protein | 559 | 35% helix, 18% strand | O06994 |
Ligands and binding sites
- CA · Calcium ion · metal · chains B
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains B
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 706 | 0.80 | 0.84 | 62 | TRS, GOL |
| 2 | 105 | 0.37 | 0.75 | 25 | empty |
| 3 | 63 | 0.25 | 0.72 | 18 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O06994
- Elsewhere: RCSB PDB 7LV6 · PDBe 7LV6 · UniProt O06994
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