MolNFT v1 · #181267 · protein
Cryo-EM structure of llama J3 vhh antibody in complex with HIV-1 env BG505 ds-SOSIP.664
7LPN: “Cryo-EM structure of llama J3 vhh antibody in complex with HIV-1 env BG505 ds-SOSIP.664”. Electron microscopy, 3 ligands (NAG, BMA, MAN). MolNFT v1 #181267 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LPN
- Type
- protein
- Length
- 2,076 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6
- Ligands
- NAG, BMA, MAN
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A, E | — | protein | 121 | — | Q2N0S6 |
| G, C, F | — | protein | 451 | — | Q2N0S6 |
| H, D, I | — | protein | 120 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 87 copies · chains G, C, F, B, A, E
- BMA · beta-D-mannopyranose · sugar · 12 copies
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains I, H, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LPN · Cryo-EM structure of llama J3 VHH antibody in complex with HIV-1 Env BG505 DS-SOSIP.664 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 7LPN · PDBe 7LPN · UniProt Q2N0S6
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