MolNFT v1 · #180961 · protein
BG505 SOSIP.V5.2 in complex with VRC40.01 and RM19R fabs
7LG6: “BG505 SOSIP.V5.2 in complex with VRC40.01 and RM19R fabs”. Electron microscopy, 4 ligands (NAG, MAN, BMA). MolNFT v1 #180961 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LG6
- Type
- protein
- Length
- 3,153 residues
- Chains
- 18
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S6
- Ligands
- NAG, MAN, BMA, FUC
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E, F | — | protein | 450 | — | Q2N0S6 |
| H, O, P | — | protein | 123 | — | — |
| L, Q, R | — | protein | 107 | — | — |
| B, G, I | — | protein | 146 | — | Q2N0S6 |
| D, M, N | — | protein | 105 | — | — |
| C, J, K | — | protein | 120 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 99 copies · chains A, B, H, E, G, O, F, I, P, D, M, N
- MAN · alpha-D-mannopyranose · sugar · 24 copies · chains A, L, H, E, Q, O, F, R, P
- BMA · beta-D-mannopyranose · sugar · 9 copies · chains H, L, O, Q, P, R
- FUC · alpha-L-fucopyranose · sugar · 3 copies · chains B, G, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LG6 · BG505 SOSIP.v5.2 in complex with VRC40.01 and RM19R Fabs · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S6
- Elsewhere: RCSB PDB 7LG6 · PDBe 7LG6 · UniProt Q2N0S6
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