MolNFT v1 · #180939 · protein
Model of MHC class ib H2-M3 with mouse ND1 N-terminal heptapeptide, thr mutant, refined at 1.60 ångströms resolution
7LFK: “Model of MHC class ib H2-M3 with mouse ND1 N-terminal heptapeptide, thr mutant, refined at 1.60 ångströms…”. X-ray diffraction, 2 ligands (NAG, NA). MolNFT v1 #180939 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7LFK
- Type
- protein
- Length
- 762 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q31093, P01887, P03888
- Ligands
- NAG, NA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 275 | — | Q31093 |
| B, E | — | protein | 99 | — | P01887 |
| C, F | — | protein | 7 | — | P03888 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- NA · Sodium ion · metal · 6 copies · chains A, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LFK · MODEL OF MHC CLASS Ib H2-M3 WITH MOUSE ND1 N-TERMINAL HEPTAPEPTIDE, THR MUTANT, REFINED… · the same entry in another collection · chain F against F, TM-score 1.00
- P01887 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P01887) · a predicted model of the same protein · chain E against A, TM-score 0.99
- P03888 · AlphaFold monomer V2.0 prediction for NADH-ubiquinone oxidoreductase chain 1 (P03888) · a predicted model of the same protein · chain C against A, TM-score 0.51
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q31093
- Every structure of UniProt P01887
- Every structure of UniProt P03888
- Elsewhere: RCSB PDB 7LFK · PDBe 7LFK · UniProt Q31093 · UniProt P01887 · UniProt P03888
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