MolNFT v1 · #180932 · protein

Fab 7D6 bound to APOL1 BH3 like peptide

7LFD: “Fab 7D6 bound to APOL1 BH3 like peptide”. X-ray diffraction, 1 ligand (NH4). MolNFT v1 #180932 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7LFD
Type: protein
Length: 455 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O14791
Ligands: NH4

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	17	—	O14791
H	—	protein	224	—	—
L	—	protein	214	—	—

Ligands and binding sites

NH4 · Ammonium ion · ion · chains H, L
GOL · Glycerol · additive · 3 copies · chains H, L
FLC · Citrate anion · additive · chains A, H
EOH · Ethanol · additive · chains H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

7LFD · Fab 7D6 bound to ApoL1 BH3 like peptide · the same entry in another collection · chain L against L, TM-score 1.00
O14791 · AlphaFold monomer V2.0 prediction for apolipoprotein L1 (O14791) · a predicted model of the same protein · chain A against A, TM-score 0.65

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O14791
Elsewhere: RCSB PDB 7LFD · PDBe 7LFD · UniProt O14791

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