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MolNFT v1 · #180861 · protein

Structure of human GGT1 in complex with abba

7LD9: “Structure of human GGT1 in complex with abba”. X-ray diffraction, 5 ligands (XUJ, XU7, NAG). MolNFT v1 #180861 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7LD9
Type
protein
Length
532 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P19440
Ligands
XUJ, XU7, NAG, NA, CL

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein343—P19440
B—protein189—P19440

Ligands and binding sites

  • XUJ · (2R)-2-amino-4-boronobutanoic acid · ligand · chains A, B
  • XU7 · (2S)-2-amino-4-boronobutanoic acid · ligand · chains A, B
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A, B
  • NA · Sodium ion · metal · chains A, B
  • CL · Chloride ion · ion · 2 copies · chains A, B
  • EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7LD9 · Structure of human GGT1 in complex with ABBA · the same entry in another collection · chain A against A, TM-score 1.00
  • P19440 · AlphaFold monomer V2.0 prediction for glutathione hydrolase 1 proenzyme (P19440) · a predicted model of the same protein · chain A against A, TM-score 0.99

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