MolNFT v1 · #180700 · protein
BG505 SOSIP.V5.2(7S) in complex with the polyclonal Fab pabc-1 from animal RH.33172 (WK38 time point)
7L8E: “BG505 SOSIP.V5.2(7S) in complex with the polyclonal Fab pabc-1 from animal RH.33172 (WK38 time point)”. Electron microscopy, 3 ligands (NAG, MAN, BMA). MolNFT v1 #180700 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7L8E
- Type
- protein
- Length
- 1,912 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S5
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | — | protein | 444 | — | Q2N0S5 |
| D | — | protein | 125 | — | Q2N0S5 |
| E | — | protein | 441 | — | Q2N0S5 |
| F | — | protein | 126 | — | Q2N0S5 |
| A | — | protein | 445 | — | Q2N0S5 |
| B | — | protein | 121 | — | Q2N0S5 |
| H | — | protein | 111 | — | — |
| L | — | protein | 99 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 86 copies · chains C, E, A, B, D, F, L
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7L8E · BG505 SOSIP.v5.2(7S) in complex with the polyclonal Fab pAbC-1 from animal Rh.33172 (Wk38… · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S5
- Elsewhere: RCSB PDB 7L8E · PDBe 7L8E · UniProt Q2N0S5
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