MolNFT v1 · #180577 · protein
Dihydrodipicolinate synthase (dhdps) from C.JEJUNI with pyruvate bound in the active site in P1211 space group
7L4B: “Dihydrodipicolinate synthase (dhdps) from C.JEJUNI with pyruvate bound in the active site in P1211 space group”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #180577 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7L4B
- Type
- protein
- Length
- 3,550 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9PPB4
- Ligands
- MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, F, G, H, I, J, K, L | — | protein | 296 | — | Q9PPB4 |
| E | — | protein | 294 | — | Q9PPB4 |
Ligands and binding sites
- MG · Magnesium ion · metal · 7 copies · chains A, C, D, E, F, J
- PGE · Triethylene glycol · additive · 14 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
- ACT · Acetate ion · additive · 3 copies · chains C, I, F, H, E, L
- EDO · 1,2-ethanediol · additive · chains J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7L4B · Dihydrodipicolinate synthase (DHDPS) from C.jejuni with pyruvate bound in the active site… · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PPB4
- Elsewhere: RCSB PDB 7L4B · PDBe 7L4B · UniProt Q9PPB4
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