MolNFT v1 · #180347 · protein
Dihydrodipicolinate synthase (dhdps) from C.JEJUNI with pyruvate bound in the active site and L-lysine bound at the allosteric site in C2221 space group
7KWP: “Dihydrodipicolinate synthase (dhdps) from C.JEJUNI with pyruvate bound in the active site and L-lysine bound…”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #180347 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KWP
- Type
- protein
- Length
- 1,782 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9PPB4
- Ligands
- MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | — | protein | 297 | — | Q9PPB4 |
Ligands and binding sites
- MG · Magnesium ion · metal · 6 copies · chains A, B, C
- EDO · 1,2-ethanediol · additive · 5 copies · chains B, D, E
- PEG · Di(hydroxyethyl)ether · additive · chains C
- PGE · Triethylene glycol · additive · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KWP · Dihydrodipicolinate synthase (DHDPS) from C.jejuni with pyruvate bound in the active site… · the same entry in another collection · chain F against F, TM-score 1.00
- Q9PPB4 · AlphaFold monomer V2.0 prediction for 4-hydroxy- tetrahydrodipicolinate synthase (Q9PPB4) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PPB4
- Elsewhere: RCSB PDB 7KWP · PDBe 7KWP · UniProt Q9PPB4
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