MolNFT v1 · #180294 · protein
Dihydrodipicolinate synthase (dhdps) from C.JEJUNI, H56N mutant with pyruvate bound in the active site and L-lysine bound at the allosteric site
7KUZ: “Dihydrodipicolinate synthase (dhdps) from C.JEJUNI, H56N mutant with pyruvate bound in the active site and…”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #180294 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KUZ
- Type
- protein
- Length
- 1,803 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9PPB4
- Ligands
- MG
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, F | — | protein | 297 | — | Q9PPB4 |
| B | — | protein | 299 | — | Q9PPB4 |
| C | — | protein | 306 | — | Q9PPB4 |
| D | — | protein | 307 | — | Q9PPB4 |
| E | — | protein | 297 | — | Q9PPB4 |
Ligands and binding sites
- MG · Magnesium ion · metal · 12 copies · chains A, B, C, D, E, F
- EDO · 1,2-ethanediol · additive · 21 copies · chains A, B, D, C, E, F
- PEG · Di(hydroxyethyl)ether · additive · 10 copies · chains A, F, B, C, D, E
- ACT · Acetate ion · additive · 9 copies · chains A, B, C, D, E, F
- PGE · Triethylene glycol · additive · 5 copies · chains A, C, D, E
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KUZ · Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H56N mutant with pyruvate bound in… · the same entry in another collection · chain C against C, TM-score 1.00
- Q9PPB4 · AlphaFold monomer V2.0 prediction for 4-hydroxy- tetrahydrodipicolinate synthase (Q9PPB4) · a predicted model of the same protein · chain F against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9PPB4
- Elsewhere: RCSB PDB 7KUZ · PDBe 7KUZ · UniProt Q9PPB4
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