MolNFT v1 · #180285 · protein
Crystal structure of danio rerio histone deacetylase 10 Y307F mutant in complex with N8-acetylspermidine
7KUQ: “Crystal structure of danio rerio histone deacetylase 10 Y307F mutant in complex with N8-acetylspermidine”. X-ray diffraction, 5 ligands (Q9C, K, ZN). MolNFT v1 #180285 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KUQ
- Type
- protein
- Length
- 640 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- F1QCV2
- Ligands
- Q9C, K, ZN, NA, PO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 640 | — | F1QCV2 |
Ligands and binding sites
- Q9C · N-{4-[(3-aminopropyl)amino]butyl}acetamide · ligand · chains A
- K · Potassium ion · metal · 2 copies · chains A
- ZN · Zinc ion · metal · chains A
- NA · Sodium ion · metal · chains A
- PO4 · Phosphate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KUQ · Crystal Structure of Danio rerio Histone Deacetylase 10 Y307F Mutant in Complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- F1QCV2 · AlphaFold monomer V2.0 prediction for polyamine deacetylase HDAC10 (F1QCV2) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F1QCV2
- Elsewhere: RCSB PDB 7KUQ · PDBe 7KUQ · UniProt F1QCV2
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