MolNFT v1 · #180113 · protein

Crystal structure of HEPHB1 in apo form

7KPL · Ephrin type-B receptor 1: “Crystal structure of HEPHB1 in apo form”. X-ray diffraction, 1 pocket (best druggability 0.60). MolNFT v1 #180113 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7KPL
Type: protein
Length: 256 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ephrin type-B receptor 1
EC: 2.7.10.1
UniProt: P54762
Pockets: 1 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ephrin type-B receptor 1 (EC 2.7.10.1)	protein	256	42% helix, 16% strand	P54762

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	278	0.60	0.79	29	empty

Modifications

Observed in the structure: 1 modified (phosphorylation).

Compared structures

7KPL · Crystal structure of hEphB1 in apo form · the same entry in another collection · chain A against A, TM-score 1.00
P54762 · AlphaFold monomer V2.0 prediction for ephrin type-B receptor 1 (P54762) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P54762
Elsewhere: RCSB PDB 7KPL · PDBe 7KPL · UniProt P54762

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