MolNFT v1 · #180056 · protein
Solution NMR structure of CDHR3 extracellular domain EC1
7KNV · Cadherin-related family member 3: “Solution NMR structure of CDHR3 extracellular domain EC1”. Solution nmr, 1 ligand (CA), 1 pocket (best druggability 0.52). MolNFT v1 #180056 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7KNV
- Type
- protein
- Length
- 126 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cadherin-related family member 3
- UniProt
- Q6ZTQ4
- Ligands
- CA
- Pockets
- 1 · best druggability 0.52
Structure
solution nmr · 1 distinct chain · 2% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cadherin-related family member 3 | protein | 126 | 2% helix, 38% strand | Q6ZTQ4 |
Ligands and binding sites
- CA · Calcium ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.52 | 0.87 | 22 | empty |
Compared structures
- 7KNV · Solution NMR structure of CDHR3 extracellular domain EC1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q6ZTQ4 · AlphaFold monomer V2.0 prediction for cadherin-related family member 3 (Q6ZTQ4) · a predicted model of the same protein · chain A against A, TM-score 0.74
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6ZTQ4
- Elsewhere: RCSB PDB 7KNV · PDBe 7KNV · UniProt Q6ZTQ4
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