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MolNFT v1 · #179975 · protein

Human ARGINASE1 complexed with inhibitor compound 3A

7KLK: “Human ARGINASE1 complexed with inhibitor compound 3A”. X-ray diffraction, 2 ligands (XFP, MN). MolNFT v1 #179975 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7KLK
Type
protein
Length
1,905 residues
Chains
6
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P05089
Ligands
XFP, MN

Structure

x-ray diffraction · 5 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, C—protein317—P05089
B—protein318—P05089
D—protein318—P05089
E—protein319—P05089
F—protein316—P05089

Ligands and binding sites

  • XFP · 3-[(2~{S},3~{R})-2-carboxypiperidin-3-yl]propyl-$l^{3}-oxidanyl-bis(oxidanyl)boranuide · ligand · 6 copies · chains A, B, C, D, E, F
  • MN · Manganese (II) ion · metal · 12 copies · chains A, B, C, D, E, F
  • EDO · 1,2-ethanediol · additive · chains C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7KLK · Human Arginase1 Complexed with Inhibitor Compound 3a · the same entry in another collection · chain F against F, TM-score 1.00
  • P05089 · AlphaFold monomer V2.0 prediction for arginase-1 (P05089) · a predicted model of the same protein · chain F against A, TM-score 0.99

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