MolNFT v1 · #179970 · protein + DNA
Ternary structure of DPO4 bound to G in the template base paired with incoming dctp
7KLF: “Ternary structure of DPO4 bound to G in the template base paired with incoming dctp”. X-ray diffraction, 2 ligands (DCP, CA). MolNFT v1 #179970 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KLF
- Type
- protein + DNA
- Length
- 373 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q97W02
- Ligands
- DCP, CA
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 341 | — | Q97W02 |
| T | — | dna | 19 | — | — |
| P | — | dna | 13 | — | — |
Ligands and binding sites
- DCP · 2'-deoxycytidine-5'-triphosphate · ligand · chains A, T, P
- CA · Calcium ion · metal · 3 copies · chains A, P
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KLF · Ternary structure of Dpo4 bound to G in the template base paired with incoming dCTP · the same entry in another collection · chain A against A, TM-score 1.00
- Q97W02 · AlphaFold monomer V2.0 prediction for DNA polymerase IV (Q97W02) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97W02
- Elsewhere: RCSB PDB 7KLF · PDBe 7KLF · UniProt Q97W02
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