MolNFT v1 · #179967 · protein
Crystal structure of M4H2K1 Fab bound to HIV-1 BG505 GP120 core and to 17B Fab
7KLC: “Crystal structure of M4H2K1 Fab bound to HIV-1 BG505 GP120 core and to 17B Fab”. X-ray diffraction, 3 ligands (NAG, BMA, MAN). MolNFT v1 #179967 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KLC
- Type
- protein
- Length
- 1,230 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q2N0S5
- Ligands
- NAG, BMA, MAN
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 222 | — | — |
| L | — | protein | 218 | — | — |
| C | — | protein | 214 | — | — |
| D | — | protein | 227 | — | — |
| A | — | protein | 349 | — | Q2N0S5 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 17 copies · chains A, H
- BMA · beta-D-mannopyranose · sugar · 2 copies
- MAN · alpha-D-mannopyranose · sugar · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KLC · Crystal structure of M4H2K1 Fab bound to HIV-1 BG505 gp120 core and to 17b Fab · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2N0S5
- Elsewhere: RCSB PDB 7KLC · PDBe 7KLC · UniProt Q2N0S5
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