MolNFT v1 · #179871 · protein + DNA
Muscovy duck circovirus rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site and MN2+
7KII: “Muscovy duck circovirus rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site…”. X-ray diffraction, 3 ligands (CA, MN, SO4). MolNFT v1 #179871 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7KII
- Type
- protein + DNA
- Length
- 113 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D2JZX8
- Ligands
- CA, MN, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 103 | — | D2JZX8 |
| C | — | dna | 10 | — | — |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A
- MN · Manganese (II) ion · metal · chains A, C
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KII · Muscovy duck circovirus Rep domain complexed with a single-stranded DNA 10-mer comprising… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2JZX8
- Elsewhere: RCSB PDB 7KII · PDBe 7KII · UniProt D2JZX8
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