MolNFT v1 · #179848 · protein
Crystal structure of the carbohydrate-binding domain VP8* of human P[4] rotavirus strain BM5265 in complex with lndfh I
7KHU: “Crystal structure of the carbohydrate-binding domain VP8* of human P[4] rotavirus strain BM5265 in complex…”. X-ray diffraction, 4 ligands (GAL, FUC, BGC). MolNFT v1 #179848 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 7KHU
- Type
- protein
- Length
- 317 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- E9BVI9
- Ligands
- GAL, FUC, BGC, NAG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 158 | — | E9BVI9 |
| B | — | protein | 159 | — | E9BVI9 |
Ligands and binding sites
- GAL · beta-D-galactopyranose · sugar · 4 copies · chains A, B
- FUC · alpha-L-fucopyranose · sugar · 4 copies · chains A, B
- BGC · beta-D-glucopyranose · sugar · 2 copies · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KHU · Crystal structure of the carbohydrate-binding domain VP8* of human P[4] rotavirus strain… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E9BVI9
- Elsewhere: RCSB PDB 7KHU · PDBe 7KHU · UniProt E9BVI9
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