MolNFT v1 · #179739 · protein
Crystallographic structure of L,D-transpeptidase 2 from mycobacterium tuberculosis
7KEM: “Crystallographic structure of L,D-transpeptidase 2 from mycobacterium tuberculosis”. X-ray diffraction, 2 ligands (0JC, PT). MolNFT v1 #179739 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7KEM
- Type
- protein
- Length
- 529 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- I6Y9J2
- Ligands
- 0JC, PT
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 259 | — | I6Y9J2 |
| B | — | protein | 270 | — | I6Y9J2 |
Ligands and binding sites
- 0JC · Di-mu-iodobis(ethylenediamine)diplatinum(II) · ligand · 8 copies · chains A, B
- PT · Platinum (II) ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7KEM · Crystallographic structure of L,D-transpeptidase 2 from Mycobacterium tuberculosis · the same entry in another collection · chain B against B, TM-score 1.00
- I6Y9J2 · AlphaFold monomer V2.0 prediction for L,D-transpeptidase 2 (I6Y9J2) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I6Y9J2
- Elsewhere: RCSB PDB 7KEM · PDBe 7KEM · UniProt I6Y9J2
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