MolNFT v1 · #179560 · protein

Crystal structure of bacillus halodurans oapb (iodine-derivative) at 1.0 a

7K9C · Ole-associated protein B: “Crystal structure of bacillus halodurans oapb (iodine-derivative) at 1.0 a”. X-ray diffraction, 1 ligand (IOD), 3 pockets (best druggability 0.43). MolNFT v1 #179560 on GenesisL1: 3D structure, binding…

PDB: 7K9C
Type: protein
Length: 194 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ole-associated protein B
UniProt: Q9KGD7
Ligands: IOD
Pockets: 3 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Ole-associated protein B	protein	97	35% helix, 29% strand	Q9KGD7

Ligands and binding sites

IOD · Iodide ion · ion · 16 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	136	0.43	0.76	18	empty
2	56	0.41	0.82	20	IOD
3	54	0.29	0.75	9	empty

Interfaces

1 interface between chains.

A–B · 262 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

7K9C · Crystal structure of Bacillus halodurans OapB (iodine-derivative) at 1.0 A · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9KGD7
Elsewhere: RCSB PDB 7K9C · PDBe 7K9C · UniProt Q9KGD7

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