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MolNFT v1 · #179519 · protein

KIR3DL1*001 in complex with HLA-A*24:02 presenting the rypltfgw peptide

7K80: “KIR3DL1*001 in complex with HLA-A*24:02 presenting the rypltfgw peptide”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #179519 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7K80
Type
protein
Length
1,333 residues
Chains
8
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
A0A411J078, P61769, P43629
Ligands
NAG

Structure

x-ray diffraction · 5 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, D—protein276—A0A411J078
B, E—protein100—P61769
C, F—protein8——
G—protein290—P43629
H—protein275—P43629

Ligands and binding sites

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains G, H
  • ACT · Acetate ion · additive · 5 copies · chains A, B, D, E
  • FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7K80 · KIR3DL1*001 in complex with HLA-A*24:02 presenting the RYPLTFGW peptide · the same entry in another collection · chain H against H, TM-score 1.00
  • P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain E against A, TM-score 0.98
  • P43629 · AlphaFold monomer V2.0 prediction for killer cell immunoglobulin-like receptor 3DL1… · a predicted model of the same protein · chain G against A, TM-score 0.96

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