MolNFT v1 · #179392 · protein

Sgbp-B from a complex xyloglucan utilization locus in bacteroides uniformis

7K44: “Sgbp-B from a complex xyloglucan utilization locus in bacteroides uniformis”. X-ray diffraction, 1 ligand (CA), 3 pockets (best druggability 0.51). MolNFT v1 #179392 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7K44
Type: protein
Length: 356 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sgbp-B
UniProt: A7V885
Ligands: CA
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sgbp-B	protein	356	6% helix, 47% strand	A7V885

Ligands and binding sites

CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	196	0.51	0.77	22	empty
2	75	0.46	0.82	23	empty
3	115	0.38	0.74	25	empty

Compared structures

7K44 · SGBP-B from a complex xyloglucan utilization locus in Bacteroides uniformis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7V885
Elsewhere: RCSB PDB 7K44 · PDBe 7K44 · UniProt A7V885

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