MolNFT v1 · #179373 · protein
Crystal structure of DLC8 in complex with panoramix tq peptide
7K3L · Dynein light chain 1, cytoplasmic: “Crystal structure of DLC8 in complex with panoramix tq peptide”. X-ray diffraction. MolNFT v1 #179373 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7K3L
- Type
- protein
- Length
- 98 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dynein light chain 1, cytoplasmic; Protein panoramix
- UniProt
- Q24117, Q9W2H9
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dynein light chain 1, cytoplasmic | protein | 86 | 38% helix, 40% strand | Q24117 |
| B | Protein panoramix | protein | 12 | 0% helix, 58% strand | Q9W2H9 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 632 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 7K3L · Crystal structure of dLC8 in complex with Panoramix TQ peptide · the same entry in another collection · chain A against A, TM-score 1.00
- Q24117 · AlphaFold monomer V2.0 prediction for dynein light chain 1, cytoplasmic (Q24117) · a predicted model of the same protein · chain A against A, TM-score 0.99
- Q9W2H9 · AlphaFold monomer V2.0 prediction for protein panoramix (Q9W2H9) · a predicted model of the same protein · chain B against A, TM-score 0.30
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q24117
- Every structure of UniProt Q9W2H9
- Elsewhere: RCSB PDB 7K3L · PDBe 7K3L · UniProt Q24117 · UniProt Q9W2H9
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